Tuesday, September 15, 2015

A systems biology like approach to explain a failure or a systems biology like approach to easy your pain

The worse thing that can happen to someone is liking someone and fail to accomplish what your hopes take you to. A broken heart is quite difficult, specially if it has been happening for quite a while. What can be a quite pain is the fact that you are so down that you talk to someone, and certainly that person is not going to loss the opportunity to tell you what to do. They advise how you should have handled the problem, e.g. you should not tell her you feelings, you should not go so fast, you should have waited, you shouldn't have waited. What piece me off the most is that the comments are vague, personal, and limited; as vague as prediction from people that read cards. Some would take them as granted, once when you fail, you fail. At least in my reality, a girl's no is no, there is no coming back. So what lasts to us is either cry until no tear is left or take an active position, making science of it! Einstein once said that theory is when you know all, but nothing works; experiment is when all works, but no one understand a thing. Herein we are in the theory domain.

Systems biology is a set of ideas and methodologies mainly developed in the last decades, however the core is as old as the Greek miracle. The ideia is quite simple: imagine you have a system you want to understand scientifically, make laws, design experiments, make predictions, and so on, all the goods a scientific wisdom can provide you. However, it soon comes to you that by studying parts by parts, you always miss something. What is light stopped like? asked Einstein; the answer is nothing, light just exist at the speed of light. What is the blur of a stone tightened to a piece of rope like? Nothing, it must be in circle, with a certain speed to make a blur. Of course, all the examples are from physics, and they are simple systems, single entities. What about, the beating of your heart using just one protein? nothing, it must have several proteins interacting to make the periodic rhythm that keeps you alive. Thus, systems biology is a paradigm for studying systems that cannot be understood when they are singled out. Examples are many such as cancer, caused by several or a small number of genes, network motifs that creates important subsystems such as filters and so on.
Are you still following me? where is the girl's stuff? good. We said that someone has broken you heart, you are depressed, and you make the mistake to talk to someone. That person will try to ease your pain by telling what you should have done. So far so good. The first mistake is that from a systems biology perspective, a "yes" or "no", a broken heart from a nice meeting is an interaction thing; therefore, your wizard's advise might not work for you. Picture each person as a node in a graph, if you are not familiar with these concept, you can find them in the internet, they are not complicate. Picture the yes or no as a connection, called edge. See that several things cannot be controlled, such as the place, the people around you and so on; of course, I suppose, you are not going to try something in the coffee break of your mathematics meeting, I would not. Call all these details, stochastic. They are perturbations that you have no control, but may influence your performance. So the ones that you can control is you and the other person, not her response, but who to talk to, not completely, but somehow. This means that if you keep all the same and replace one node, such as you or the person you decided to give a shot, you might have an yes or not, opposite to the previous result; of course, life is not so simple, playing with the feelings of the others can be wrong, catastrophic, death sentence. So, any law that someone gives you is for the edge, not the node.

Of course it would be easier if we could make experiments. Further, we need an almost equal amount of yes and nos, but most people is going to tend for one of them. For instance, in my case, I have a small success rate, then I cannot say what is stochastic and what is merit of mine, cannot say what is edge and what is node. If you fail, does not necessarily mean that doing the opposite you are going to get the opposite result; even if so, the opposite is not black and right.   

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